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Zirui Huang

29 papers in the library · 1,122 citations · publishing 2013-2026

Papers

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Opposite network patterns of integration-segregation in psychedelic and sedated states of consciousness.

Cell Reports August 1, 2026 Rui Dai, Hyunwoo Jang, Anthony G. Hudetz et al.

Understanding the relationship of conscious states to large-scale brain dynamics remains a central challenge in neuroscience. Here, diverse pharmacological and physiological perturbations-including psychedelics, sleep, and propofol sedation-are used to examine integration-segregation organization of brain networks across altered states of consciousness in humans using functional MRI. Across...

Reorganization of Human Brain Waves Across Diverse States of Consciousness.

bioRxiv : the preprint server for biology June 1, 2026 Panagiotis Fotiadis, Hyunwoo Jang, Rui Dai et al. preprint

Brain waves are ubiquitous phenomena of human brain activity. As they propagate, they coordinate neural communication, shaping conscious perception. Understanding how brain waves unfold across space and time is thus critical for uncovering the neural mechanisms that support and suppress consciousness. Here, we analyzed data from the Human Connectome Project alongside multiple independent human...

An open fMRI resource for studying human brain function and covert consciousness under anesthesia.

Scientific Data January 9, 2026 Zirui Huang, Vijay Tarnal, Panagiotis Fotiadis et al.

Anesthesia has revolutionized surgical practice and offers a controlled model to study the neurobiology of consciousness. Functional magnetic resonance imaging (fMRI) studies have shown that anesthesia primarily disrupts connectivity across association cortices, suggesting that impaired integration between higher-order brain regions underlies unconsciousness. However, traditional fMRI paradigms...

A Mesoscale Framework for Psychedelic Drug Action in the Human Brain

bioRxiv November 26, 2025 Rui Dai, Rodrigo Cofré, Christopher Timmermann et al. preprint

The mechanism of psychedelic drug action is a dynamic area of neuroscience, with two major lines of investigation: (1) laboratory studies at the molecular and cellular level, and (2) human neuroimaging studies of functional brain networks. Despite considerable progress, there remains insufficient understanding of the link between molecular/cellular substrates of psychedelics and the whole-brain...

Measuring the dynamic balance of integration and segregation underlying consciousness, anesthesia, and sleep in humans.

Nature Communications October 24, 2024 Hyunwoo Jang, George A. Mashour, Anthony G. Hudetz et al.

Consciousness requires a dynamic balance of integration and segregation in brain networks. We report an fMRI-based metric, the integration-segregation difference (ISD), which captures two key network properties: network efficiency (integration) and clustering (segregation). With this metric, we quantify brain state transitions from conscious wakefulness to unresponsiveness induced by the...

Neural Correlates of Psychedelic, Sleep, and Sedated States Support Global Theories of Consciousness.

bioRxiv : the preprint server for biology October 23, 2024 Rui Dai, Hyunwoo Jang, Anthony G. Hudetz et al. 1 citation preprint

Understanding neural mechanisms of consciousness remains a challenging question in neuroscience. A central debate in the field concerns whether consciousness arises from global interactions that involve multiple brain regions or focal neural activity, such as in sensory cortex. Additionally, global theories diverge between the Global Neuronal Workspace (GNW) hypothesis, which emphasizes frontal...

DOI: 10.1101/2024.10.23.619731 (opens in new tab) Full text (opens in new tab) Global neuronal workspace Integrated information theory Anesthesia Consciousness +7

Propofol disrupts the functional core-matrix architecture of the thalamus in humans

Nature Communications September 9, 2024 Zirui Huang, George A. Mashour, Anthony G. Hudetz 23 citations

Research into the role of thalamocortical circuits in anesthesia-induced unconsciousness is difficult due to anatomical and functional complexity. Prior neuroimaging studies have examined either the thalamus as a whole or focused on specific subregions, overlooking the distinct neuronal subtypes like core and matrix cells. We conducted a study of heathy volunteers and functional magnetic...

DOI: 10.1038/s41467-024-51837-1 (opens in new tab) Full text (opens in new tab) Propofol Thalamus Core optical fiber Architecture +3

Classifying Unconscious, Psychedelic, and Neuropsychiatric Brain States with Functional Connectivity, Graph Theory, and Cortical Gradient Analysis.

Brain Sciences August 30, 2024 Hyunwoo Jang, Rui Dai, George A. Mashour et al.

Accurate and generalizable classification of brain states is essential for understanding their neural underpinnings and improving clinical diagnostics. Traditionally, functional connectivity patterns and graph-theoretic metrics have been utilized. However, cortical gradient features, which reflect global brain organization, offer a complementary approach. We hypothesized that a machine learning...

DOI: 10.3390/brainsci14090880 (opens in new tab) Full text (opens in new tab) Anesthesia Cortical gradient Functional connectivity Graph theory +6

Measuring the dynamic balance of integration and segregation underlying consciousness, anesthesia, and sleep

bioRxiv April 15, 2024 Hyunwoo Jang, George A. Mashour, Anthony G. Hudetz et al. preprint

Consciousness requires a dynamic balance of integration and segregation in functional brain networks. An optimal integration-segregation balance depends on two key aspects of functional connectivity: global efficiency (i.e., integration) and clustering (i.e., segregation). We developed a new fMRI-based measure, termed the integration-segregation difference (ISD), which captures both aspects. We...

Psychedelic concentrations of nitrous oxide reduce functional differentiation in frontoparietal and somatomotor cortical networks.

Communications Biology December 19, 2023 Rui Dai, Zirui Huang, Tony E. Larkin et al. 7 citations

Despite the longstanding use of nitrous oxide and descriptions of its psychological effects more than a century ago, there is a paucity of neurobiological investigation of associated psychedelic experiences. We measure the brain's functional geometry (through analysis of cortical gradients) and temporal dynamics (through analysis of co-activation patterns) using human resting-state functional...

Theoretical Neurobiology of Consciousness Applied to Human Cerebral Organoids.

Cambridge Quarterly of Healthcare Ethics October 18, 2023 Matthew Owen, Zirui Huang, Catherine Duclos et al.

Organoids and specifically human cerebral organoids (HCOs) are one of the most relevant novelties in the field of biomedical research. Grown either from embryonic or induced pluripotent stem cells, HCOs can be used as in vitro three-dimensional models, mimicking the developmental process and organization of the developing human brain. Based on that, and despite their current limitations, it...

DOI: 10.1017/s0963180123000543 (opens in new tab) Full text (opens in new tab) Consciousness Human cerebral organoids Neurobiology

Temporospatial Nestedness in Consciousness: An Updated Perspective on the Temporospatial Theory of Consciousness

Entropy July 17, 2023 Zirui Huang 5 citations

Time and space are fundamental elements that permeate the fabric of nature, and their significance in relation to neural activity and consciousness remains a compelling yet unexplored area of research. The Temporospatial Theory of Consciousness (TTC) provides a framework that links time, space, neural activity, and consciousness, shedding light on the intricate relationships among these...

Classical and non-classical psychedelic drugs induce common network changes in human cortex.

Neuroimage June 1, 2023 Rui Dai, Tony E. Larkin, Zirui Huang et al. 49 citations

The neurobiology of the psychedelic experience is not fully understood. Identifying common brain network changes induced by both classical (i.e., acting at the 5-HT2 receptor) and non-classical psychedelics would provide mechanistic insight into state-specific characteristics. We analyzed whole-brain functional connectivity based on resting-state fMRI data in humans, acquired before and during...

Scale-free dynamics in the core-periphery topography and task alignment decline from conscious to unconscious states

Communications Biology May 9, 2023 Philipp Klar, Yasir Çatal, Robert Langner et al. 35 citations

Scale-free physiological processes are ubiquitous in the human organism. Resting-state functional MRI studies observed the loss of scale-free dynamics under anesthesia. In contrast, the modulation of scale-free dynamics during task-related activity remains an open question. We investigate scale-free dynamics in the cerebral cortex's unimodal periphery and transmodal core topography in rest and...

DOI: 10.1038/s42003-023-04879-y (opens in new tab) Full text (opens in new tab) Dynamics music Consciousness Noise video Task project management +8

Functional geometry of the cortex encodes dimensions of consciousness

Nature Communications January 5, 2023 Zirui Huang, George A. Mashour, Anthony G. Hudetz

Consciousness is a multidimensional phenomenon, but key dimensions such as awareness and wakefulness have been described conceptually rather than neurobiologically. We hypothesize that dimensions of consciousness are encoded in multiple neurofunctional dimensions of the brain. We analyze cortical gradients, which are continua of the brain’s overarching functional geometry, to characterize these...

Criticality Creates a Functional Platform for Network Transitions Between Internal and External Processing Modes in the Human Brain

Frontiers in Systems Neuroscience December 1, 2021 Minkyung Kim, Hyoungkyu Kim, Zirui Huang et al.

Continuous switching between internal and external modes in the brain appears important for generating models of the self and the world. However, how the brain transitions between these two modes remains unknown. We propose that a large synchronization fluctuation of brain networks, emerging only near criticality (i.e., a balanced state between order and disorder), spontaneously creates...

DOI: 10.3389/fnsys.2021.657809 (opens in new tab) Full text (opens in new tab) Criticality Consciousness Oscillator model EEG +2

Anterior insula regulates brain network transitions that gate conscious access

Cell Reports May 1, 2021 Zirui Huang, Vijay Tarnal, Phillip E. Vlisides et al. 119 citations

Conscious access to sensory information is likely gated at an intermediate site between primary sensory and transmodal association cortices, but the structure responsible remains unknown. We perform functional neuroimaging to determine the neural correlates of conscious access using a volitional mental imagery task, a report paradigm not confounded by motor behavior. Titrating propofol to loss...

DOI: 10.1016/j.celrep.2021.109081 (opens in new tab) Default mode network Sensory gating Sensory system Insular cortex +7

Higher-order sensorimotor circuit of the brain's global network supports human consciousness.

Neuroimage May 1, 2021 Pengmin Qin, Xuehai Wu, Changwei W Wu et al. 51 citations

Consciousness is a mental characteristic of the human mind, whose exact neural features remain unclear. We aimed to identify the critical nodes within the brain's global functional network that support consciousness. To that end, we collected a large fMRI resting state dataset with subjects in at least one of the following three consciousness states: preserved (including the healthy awake...

DOI: 10.1016/j.neuroimage.2021.117850 (opens in new tab) Full text (opens in new tab) Anesthesia Degree centrality Disorders of consciousness Higher-order sensorimotor circuit +1

Temporal circuit of macroscale dynamic brain activity supports human consciousness

Science Advances March 1, 2020 Zirui Huang, Jun Zhang, Jinsong Wu et al.

Neuroimaging suggests that human consciousness relies on frequent access to default mode and dorsal attention brain networks. The ongoing stream of human consciousness relies on two distinct cortical systems, the default mode network and the dorsal attention network, which alternate their activity in an anticorrelated manner. We examined how the two systems are regulated in the conscious brain...

Disrupted neural variability during propofol-induced sedation and unconsciousness.

Human Brain Mapping November 2018 Zirui Huang, Jun Zhang, Jinsong Wu et al.

Variability quenching is a widespread neural phenomenon in which trial-to-trial variability (TTV) of neural activity is reduced by repeated presentations of a sensory stimulus. However, its neural mechanism and functional significance remain poorly understood. Recurrent network dynamics are suggested as a candidate mechanism of TTV, and they play a key role in consciousness. We thus asked...

DOI: 10.1002/hbm.24304 (opens in new tab) Full text (opens in new tab) Anesthesia Consciousness FMRI Neural variability +5

The temporal signature of self: Temporal measures of resting‐state EEG predict self‐consciousness

Human Brain Mapping October 4, 2018 Annemarie Wolff, Daniel A. di Giovanni, Javier Gómez‐Pilar et al. 135 citations

The self is the core of our mental life. Previous investigations have demonstrated a strong neural overlap between self-related activity and resting state activity. This suggests that information about self-relatedness is encoded in our brain's spontaneous activity. The exact neuronal mechanisms of such "rest-self containment," however, remain unclear. The present EEG study investigated...

DOI: 10.1002/hbm.24412 (opens in new tab) Default mode network Resting State FMRI Consciousness Electroencephalography +3

Brain imaging reveals covert consciousness during behavioral unresponsiveness induced by propofol.

Scientific Reports September 4, 2018 Zirui Huang, Phillip E. Vlisides, Vijaykumar C Tarnal et al.

Detecting covert consciousness in behaviorally unresponsive patients by brain imaging is of great interest, but a reproducible model and evidence from independent sources is still lacking. Here we demonstrate the possibility of using general anesthetics in a within-subjects study design to test methods or statistical paradigms of assessing covert consciousness. Using noninvasive neuroimaging in...

Topographic Reconfiguration of Local and Shared Information in Anesthetic-Induced Unconsciousness

Entropy July 10, 2018 Heonsoo Lee, Zirui Huang, Xiaolin Liu et al.

Theoretical consideration predicts that the alteration of local and shared information in the brain is a key element in the mechanism of anesthetic-induced unconsciousness. Ordinal pattern analysis, such as permutation entropy (PE) and symbolic mutual information (SMI), have been successful in quantifying local and shared information in neurophysiological data; however, they have been rarely...

DOI: 10.3390/e20070518 (opens in new tab) Full text (opens in new tab) Permutation entropy Mutual information Functional connectivity Anesthesia +1

Breakdown in the temporal and spatial organization of spontaneous brain activity during general anesthesia

Human Brain Mapping January 28, 2018 Jianfeng Zhang, Zirui Huang, Yali Chen et al. 70 citations

Which temporal features that can characterize different brain states (i.e., consciousness or unconsciousness) is a fundamental question in the neuroscience of consciousness. Using resting-state functional magnetic resonance imaging (rs-fMRI), we investigated the spatial patterns of two temporal features: the long-range temporal correlations (LRTCs), measured by power-law exponent (PLE), and...

DOI: 10.1002/hbm.23984 (opens in new tab) Unconsciousness Wakefulness Spatial variability Electroencephalography

How do the brain's time and space mediate consciousness and its different dimensions? Temporo-spatial theory of consciousness (TTC).

Neuroscience & Biobehavioral Reviews September 1, 2017 Georg Northoff, Zirui Huang 235 citations

Time and space are the basic building blocks of nature. As a unique existent in nature, our brain exists in time and takes up space. The brain's activity itself also constitutes and spreads in its own (intrinsic) time and space that is crucial for consciousness. Consciousness is a complex phenomenon including different dimensions: level/state, content/form, phenomenal aspects, and cognitive...

DOI: 10.1016/j.neubiorev.2017.07.013 (opens in new tab) Full text (opens in new tab) Phenomenology Consciousness Cross-frequency coupling Frequency nestedness +8