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Biosystems

ISSN 1872-8324, 0303-2647

48 papers in the library · 73 citations · publishing 1994-2026

Papers

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Cosmos MIND and matter: Is mind in spacetime?

Biosystems September 1, 2024 Stuart Kauffman, Sudip Patra

We attempt in this article to formulate a conceptual and testable framework weaving Cosmos, Mind and Matter into a whole. We build on three recent discoveries, each requiring more evidence: i. The particles of the Standard Model, SU(3) x SU(2) x U(1), are formally capable of collective autocatalysis. This leads us to ask what roles such autocatalysis may have played in Cosmogenesis, and in...

DOI: 10.1016/j.biosystems.2024.105262 (opens in new tab) Full text (opens in new tab) Cosmic mind Cosmogenesis Matter expands spacetime Mind actualizes potentia +4

Quantum Brain Dynamics and Virtual Reality.

Biosystems August 1, 2024 Akihiro Nishiyama, Shigenori Tanaka, Jack A Tuszynski

In this paper we propose a control theory of manipulating holograms in Quantum Brain Dynamics (QBD) involving our subjective experiences, i.e. qualia. We begin with the Lagrangian density in QBD and extend our theory to a hierarchical model involving multiple layers covering the neocortex. We adopt reservoir computing approach or morphological computation to manipulate waveforms of holograms...

DOI: 10.1016/j.biosystems.2024.105259 (opens in new tab) Full text (opens in new tab) Control theory Holography Quantum brain dynamics Quantum field theory +1

Quantum concepts in Psychology: Exploring the interplay of physics and the human psyche.

Biosystems 2024 Theodoros Kyriazos, Mary Poga

This paper delves into the innovative intersection of quantum mechanics and psychology, examining the potential of quantum principles to provide fresh insights into human emotions, cognition, and consciousness. Drawing parallels between quantum phenomena such as superposition, entanglement, tunneling, decoherence and their psychological counterparts, we present a quantum-psychological model...

DOI: 10.1016/j.biosystems.2023.105070 (opens in new tab) Full text (opens in new tab) Human psyche Interdisciplinary Quantum mechanics Quantum psychology

Estimation of discrepancy of color qualia using Kullback-Leibler divergence.

Biosystems October 1, 2023 Miku Yamada, Miu Matsumoto, Mina Arakaki et al.

Qualia have traditionally been considered difficult to measure objectively, but with the recent spread of fMRI (functional Magnetic Resonance Imaging) and other techniques, various experimental efforts have been made. In this paper, focusing on the qualia for color, we created 6 colors with different RGB values for reference colors of RED, light GREEN, BLUE, YELLOW, and PURPLE, and showed them...

DOI: 10.1016/j.biosystems.2023.105011 (opens in new tab) Full text (opens in new tab) Consciousness Kullback-leibler divergence Mathematical model Qualia

Is information the other face of causation in biological systems?

Biosystems July 1, 2023 Sergey B. Yurchenko

Is information the other face of causation? This issue cannot be clarified without discussing how these both are related to physical laws, logic, computation, networks, bio-signaling, and the mind-body problem. The relation between information and causation is also intrinsically linked to many other concepts in complex systems theory such as emergence, self-organization, synergy, criticality,...

DOI: 10.1016/j.biosystems.2023.104925 (opens in new tab) Full text (opens in new tab) Causal chains Coarse-graining Downward causation Emergence +3

Three levels of information processing in the brain.

Biosystems July 1, 2023 Aleksandr V Zhuravlev

Information, the measure of order in a complex system, is the opposite of entropy, the measure of chaos and disorder. We can distinguish several levels at which information is processed in the brain. The first one is the level of serial molecular genetic processes, similar in some aspects to digital computations (DC). At the same time, higher cognitive activity is probably based on parallel...

Modeling of will and consciousness based on the human language: Interpretation of qualia and psychological consciousness.

Biosystems May 1, 2023 Mina Arakaki, Chikako Dozono, Hanna Frolova et al.

In a previous paper, the authors proposed a mathematical definition of a public language and a new model of consciousness based on that public language. Consciousness spans a wide range of disciplines, including medicine, philosophy, mathematics, physics, and psychology, and it is desirable that the model of consciousness should also be able to answer questions of consciousness in each...

DOI: 10.1016/j.biosystems.2023.104890 (opens in new tab) Full text (opens in new tab) Consciousness Human language Mathematical model Qualia

Ensuring wholeness: Using Code Biology to overcome the autonomy-heteronomy divide.

Biosystems April 1, 2023 Rasmus Gahrn-Andersen, Robert Prinz 5 citations

This paper presents an alternative to Autopoietic Enactivism in the form of a Code Biology-informed account on human sense-making. It demonstrates the possibility of avoiding a dualism between, on the one hand, the autonomy of individual sense-makers and, on the other, the heteronomy of social facts. This is possible because code biological principles are pertinent to different levels of...

DOI: 10.1016/j.biosystems.2023.104874 (opens in new tab) Full text (opens in new tab) Agency Autonomy-heteronomy Autopoiesis Code biology +2

Perception of color in primates: A conceptual color neurons hypothesis.

Biosystems March 2023 Nikolay Aseyev

Perception of color by humans and other primates is a complex problem, studied by neurophysiology, psychophysiology, psycholinguistics, and even philosophy. Being mostly trichromats, simian primates have three types of opsin proteins, expressed in cone neurons in the eye, which allow for the sensing of color as the physical wavelength of light. Further, in neural networks of the retina, the...

DOI: 10.1016/j.biosystems.2023.104867 (opens in new tab) Full text (opens in new tab) Color vision Neocortex Neuronal coding Perception +2

Mathematical definition of human language, and modeling of will and consciousness based on the human language.

Biosystems March 1, 2023 Hana Hebishima, Mina Arakaki, Chikako Dozono et al.

To propose a mathematical model of consciousness and will, we first simulated the inverted qualia with a toy model of a neural network. As a result, we confirmed that there can be an inverted qualia on the neural network. In other words, the qualia were individual-dependent and considered difficult as an indicator of consciousness and will. To solve that difficulty, we introduce a probability...

DOI: 10.1016/j.biosystems.2023.104840 (opens in new tab) Full text (opens in new tab) Consciousness Information entropy Mathematical model Probability space +1

Quantum aspects of the brain-mind relationship: A hypothesis with supporting evidence.

Biosystems 2023 Stuart Kauffman, Dean Radin

If all aspects of the mind-brain relationship were adequately explained by classical physics, then there would be no need to propose alternatives. But faced with possibly unresolvable puzzles like qualia and free will, other approaches are required. In alignment with a suggestion by Heisenberg in 1958, we propose a model whereby the world consists of two elements: Ontologically real Possibles...

DOI: 10.1016/j.biosystems.2022.104820 (opens in new tab) Full text (opens in new tab) Brain-mind Consciousness Quantum biology Quantum measurement

Neuron quantum computers and a way to unification of science: A compendium of Efim Liberman's scientific work.

Biosystems July 2022 Svetlana V Minina, Nikita E Shklovskiy-Kordi

In 1972, Efim Liberman, a Soviet biophysicist, pioneered a brand-new approach to studying the operation of the brain, the live cell and the human mind by publishing a paper titled "Cell as a molecular computer" (1972). In this paper, Liberman posited that a consecutive/parallel stochastic molecular computer (MCC) controls a living cell. An MCC operates with molecule-words (DNA, RNA, proteins)...

DOI: 10.1016/j.biosystems.2022.104684 (opens in new tab) Full text (opens in new tab) Biological computation Biophysics Chaimatics Efim liberman +6

On the origin of mental representations.

Biosystems October 2019 Majid D Beni

The symbol grounding problem raises its head in the fields of the philosophy of AI, philosophy of psychology and philosophy of cognitive sciences. The solution to the symbol grounding problem must account for the genesis of mental representations in the world. It has to offer a strategy for grounding mental representations in the objective domain. Orthodox representationalist theories do not...

Integration of intracellular signaling: Biological analogues of wires, processors and memories organized by a centrosome 3D reference system.

Biosystems November 1, 2018 Nadezhda Barvitenko, Alfons Lawen, Muhammad Aslam et al.

Myriads of signaling pathways in a single cell function to achieve the highest spatio-temporal integration. Data are accumulating on the role of electromechanical soliton-like waves in signal transduction processes. Theoretical studies strongly suggest feasibility of both classical and quantum computing involving microtubules. A theoretical study of the role of the complex composed of the...

DOI: 10.1016/j.biosystems.2018.08.007 (opens in new tab) Full text (opens in new tab) Centrosome Memory Microtubule Signal transduction +2

Slime mould: The fundamental mechanisms of biological cognition.

Biosystems March 2018 Jordi Vallverdu, Oscar Castro, Richard Mayne et al.

The slime mould Physarum polycephalum has been used in developing unconventional computing devices for in which the slime mould played a role of a sensing, actuating, and computing device. These devices treated the slime mould as an active living substrate, yet it is a self-consistent living creature which evolved over millions of years and occupied most parts of the world, but in any case,...

Inverse Bayesian inference as a key of consciousness featuring a macroscopic quantum logical structure.

Biosystems February 1, 2017 Yukio-Pegio Gunji, Shuji Shinohara, Taichi Haruna et al.

To overcome the dualism between mind and matter and to implement consciousness in science, a physical entity has to be embedded with a measurement process. Although quantum mechanics have been regarded as a candidate for implementing consciousness, nature at its macroscopic level is inconsistent with quantum mechanics. We propose a measurement-oriented inference system comprising Bayesian and...

Anticipation: Beyond synthetic biology and cognitive robotics.

Biosystems October 1, 2016 Slawomir J Nasuto, Yoshikatsu Hayashi 27 citations

The aim of this paper is to propose that current robotic technologies cannot have intentional states any more than is feasible within the sensorimotor variant of embodied cognition. It argues that anticipation is an emerging concept that can provide a bridge between both the deepest philosophical theories about the nature of life and cognition and the empirical biological and cognitive sciences...

DOI: 10.1016/j.biosystems.2016.07.011 (opens in new tab) Full text (opens in new tab) Animats Anticipation Cognitive robotics Embodied cognition +1

A complex vector space model of single neuronal coding and experience.

Biosystems 2010 Andrew John Duggins

A model of consciousness is proposed, in which the experience attributable to a single sensory neuron is related to its instantaneous firing rate. In that this can only be quantified within statistical limits from the incidence of spikes across multiple presentations of a stimulus, consciousness remains inaccessible to direct measurement on a single trial. In this way, the model disambiguates...

Conduction pathways in microtubules, biological quantum computation, and consciousness.

Biosystems 2002 Stuart Hameroff, Alex Nip, Mitchell Porter et al.

Technological computation is entering the quantum realm, focusing attention on biomolecular information processing systems such as proteins, as presaged by the work of Michael Conrad. Protein conformational dynamics and pharmacological evidence suggest that protein conformational states-fundamental information units ('bits') in biological systems-are governed by quantum events, and are thus...

DOI: 10.1016/s0303-2647(01)00183-6 (opens in new tab) Microtubules Humans Tubulin Anesthesia +9

The mind/brain inequality.

Biosystems 2001 A Duggins

A unified consciousness may be resolved into multiple perceptual and conceptual components. This suggests that it might be useful to represent experience as a vector in a multi-dimensional space (the 'mental state vector'). If it is supposed that a single neuron alone supports minimal consciousness, that vector would exist in a space of minimal dimension. The direction of the vector might then...

An interdisciplinary approach towards a theory of consciousness.

Biosystems February 1998 B Mitterauer

Instead of attacking the difficult problem of consciousness or self-consciousness directly, the theory is based on the more basic concept of reflection. A concept of reflection is suggested on four levels (recursion, reflective thinking, self-reflection, intersubjective reflection). We propose the glial-neuronal interaction as a neurobiological substrate for reflection processes. It is assumed...

Vertical information flow in the brain: on neuronal micro events and consciousness.

Biosystems 1996 P Arhem

The consciousness problem and its relation to theories of spontaneous brain activity are discussed. It is argued that an evolutionary perspective suggests an interactionist solution of the consciousness problem, i.e., mental events interact with physical brain events. A specification of the physical events assumed to be associated with mental events is proposed to make the discussion of...

DOI: 10.1016/0303-2647(95)01590-6 (opens in new tab) Brain Neurons Ion channels Information science

Quantum optical coherence in cytoskeletal microtubules: implications for brain function.

Biosystems 1994 Mari Jibu, S Hagan, S R Hameroff et al.

'Laser-like,' long-range coherent quantum phenomena may occur biologically within cytoskeletal microtubules. This paper presents a theoretical prediction of the occurrence in biological media of the phenomena which we term 'superradiance' and 'self-induced transparency'. Interactions between the electric dipole field of water molecules confined within the hollow core of microtubules and the...