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bioRxiv Preprint Server

160 papers in the library · 452 citations · publishing 2015-2026

Papers

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Dynamical independence reveals anaesthetic specific fragmentation of emergent structure in neural dynamics

bioRxiv Preprint Server July 16, 2025 Borjan Milinkovic, Anil K. Seth, Lionel Barnett et al. 2 citations preprint

Conscious experience depends on the coordinated activity of neural processes that span multiple scales—from synapses to whole-brain dynamics. A recently introduced measure, dynamical independence, identifies, characterises and quantifies these multi-scale relationships using an information-theoretic dimensionality-reduction approach. Here, we use DI to examine changes in emergent dynamical...

Brain-epigenome wide association study (BEWAS) on the effects of two emerging psychedelics: ketamine & MDMA

bioRxiv Preprint Server July 3, 2025 Moira G. Semple, Sarah E. Mennenga, Ryan Smith et al. 1 citation preprint

Psychedelic compounds such as ketamine and MDMA have shown therapeutic promise for mood and trauma-related disorders, yet their molecular mechanisms remain unclear. This study applied a Brain-Epigenome-Wide Association Study (BEWAS) to assess DNA methylation changes in brain-enriched genes following treatment. Pre- and post-treatment blood (ketamine, N = 20) and saliva (MDMA, N = 16) samples...

The Effects of Ketamine on Methamphetamine Withdrawal-Induced Anxiety and Drug-Seeking Behaviors in the Rat

bioRxiv Preprint Server June 24, 2025 Marco German Ghilotti, Ricardo Petrilli Fortuna, Kofi Osei-Abrefa Ayensu et al. preprint

Background The use of methamphetamine has continued to rise in the US. In addition to facilitating dopamine neurotransmission, methamphetamine indirectly increases glutamate release which activates N-methyl-D-aspartate receptors (NMDARs). Ketamine is a noncompetitive NMDAR antagonist. Ketamine also has actions on α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptors (AMPARs) and...

Lysergic Acid Diethylamide extends lifespan in Caenorhabditis elegans

bioRxiv Preprint Server June 16, 2025 Beatriz de S. Carrilho, Aline Duarte, Isabelle Martins et al. preprint

Aging is modulated by nutrient-sensing pathways that integrate metabolic and hormonal cues to regulate growth, stress resilience, and lifespan. Caloric restriction (CR), a well-established intervention, extends longevity in diverse species through modulation of conserved nutrient-sensing pathways, including TOR signaling. Lysergic acid diethylamide (LSD), a classic serotonergic psychedelic with...

The Potential Neuroinflammatory Attenuation Effects of Thymoquinone against 3, 4-Methylenedioxymethamphetamine-Induced Microglial Activation in BV2 Mouse Cell Line

bioRxiv Preprint Server June 16, 2025 Nor Suliana Mustafa, Nasir Mohamad, Nor Hidayah Abu Bakar et al. preprint

MDMA induced the activation of microglia in the brain which would lead to neurotoxicity. The activation of microglia is associated with morphological changes and the production of inflammatory phenotypes. While there is research suggesting that thymoquinone (TQ) may have anti-inflammatory effects and modulate microglial activation, studies specifically focusing on its impact on activated...

Rapid, open-source, and automated quantification of the head twitch response in C57BL/6J mice using DeepLabCut and Simple Behavioral Analysis

bioRxiv Preprint Server April 28, 2025 Alexander D. Maitland, Nicholas R. Gonzalez, Donna Walther et al. 1 citation preprint

Serotonergic psychedelics induce the head twitch response (HTR) in mice, an index of serotonin (5-HT) 2A receptor (5-HT2A) agonism and a behavioral proxy for psychedelic effects in humans. Existing methods for detecting HTRs include time-consuming visual scoring, magnetometer-based approaches, and analysis of videos using semi-automated commercial software. Here, we present a new automated...

N1 cassette-lacking NMDA receptors mediate the antidepressant activity of ketamine

bioRxiv Preprint Server April 12, 2025 Alina T. He, Wenbo Zhang, Hongbin Li et al. preprint

Ketamine has emerged as a rapid-acting and robust antidepressant1,2. However, the mechanism of its antidepressant action remains enigmatic. The core issue that has yet to be resolved is whether NMDA receptors (NMDARs), which are subject to open channel blockade by ketamine3,4, mediate the antidepressant effect. NMDARs naturally undergo alternative splicing of the obligatory GluN1 subunit5,...

Time-to-onset and temporal dynamics of EEG during breath-watching meditation

bioRxiv Preprint Server February 11, 2025 Saketh Malipeddi, Arun Sasidharan, Rahul Venugopal et al. 2 citations preprint

Introduction Mind-body practices, such as meditation, enhance mental well-being. Research studies consistently demonstrate improved brain function and psychological well-being in meditation practitioners. A substantial body of neuroscientific evidence highlights changes in alpha and theta frequency bands during meditation among practitioners. Neurophysiological effects of meditation are...

Ketamine Alters Tuning of Neural and Behavioral Spatial Working Memory Precision

bioRxiv Preprint Server February 10, 2025 Masih Rahmati, Flora Moujaes, Nina Purg Suljič et al. 1 citation preprint

Deficits in working memory (WM) are a hallmark of neuropsy-chiatric disorders such as schizophrenia, yet their neurobiological basis remains poorly understood. Glutamate N-methyl-D-aspartate receptors (NMDARs) are critical for spatial WM (sWM), with NMDAR antagonist ketamine known to attenuate task-evoked activation and reduce sWM accuracy. Cortical microcircuit models hypothesize that NMDAR...

Psychedelic-mediated Reversal of General Anesthesia and Restoration of Brain Dynamics in Rat

bioRxiv Preprint Server January 22, 2025 Emma R. Huels, Nicholas Kolbman, Christopher W Fields et al. 4 citations preprint

Serotonergic psychedelics enhance neurophysiological complexity and the repertoire of brain states, whereas general anesthetics produce opposite effects. Serotonergic psychedelics are also known to increase wakefulness and reduce sleep time in rodents. Therefore, we hypothesized that 2,5-dimethoxy-4-iodopamphetamine (DOI), a serotonergic psychedelic, will reverse general anesthesia and restore...

Time-resolved neural and experience dynamics of medium- and high-dose DMT

bioRxiv Preprint Server December 19, 2024 Evan Lewis-Healey, Carla Pallavicini, Federico Cavanna et al. 1 citation preprint

N,N-Dimethyltryptamine (DMT) is a fast-acting psychedelic drug that induces a radical reorganisation of conscious contents and brain dynamics. However, our understanding of how brain dynamics support psychedelic-induced conscious states remains unclear. We therefore present a repeated-measures dose-dependent study of the subjective and neural dynamics induced through DMT under naturalistic...

Effects of serotonin agonists LSD and 25CN-NBOH on conditioned place preference and on synaptic plasticity of VTA dopamine neurons in mice

bioRxiv Preprint Server December 12, 2024 Lauri Elsilä, Elina Nagaeva, Jari-Pekka Luukkonen et al. 1 citation preprint

The current research on psychedelic compounds such as lysergic amide diethylamide (LSD) is leaning heavily on the notion that psychedelics are not addictive. While much of the literature supports this argument, some of the common use patterns and the descriptions of the subjective effects of these compounds in humans, together with rather lacking and mixed data from non-human animal studies...

Neural field theory as a framework for modeling and understanding consciousness states in the brain

bioRxiv Preprint Server October 27, 2024 Daniel Polyakov, P.a. Robinson, Avigail Makbili et al. preprint

Understanding the neural correlates of consciousness remains a central challenge in neuroscience. In this study, we explore the potential of neural field theory (NFT) as a computational framework for representing consciousness states. While prior research has validated NFT’s capacity to differentiate between normal and pathological states of consciousness, the relationship of its parameters to...

The neural correlates of shared and individual experience

bioRxiv Preprint Server October 20, 2024 Peter Coppola, Adrian M. Owen, David K. Menon et al. preprint

Contemporary neuroscience research typically focuses on shared contents of experience and common neural states. Conversely, we set out to explore the neural correlates of individual- specific experiences that shape the distinct traits of each person. We propose an approach through which we compute individual-specific dynamics of functional connectivity states. These dynamics do not require...

Neural Correlates of the Embodied Sense of Agency

bioRxiv Preprint Server September 6, 2024 Amit Regev Krugwasser, Reina Van der Goot, Geffen Markusfeld et al. preprint

The Sense of Agency (SoA) is the subjective experience that ‘I am in control of my actions’. Recent accounts have distinguished two levels in the formation of SoA - early implicit sensorimotor processes (feeling of agency) and later explicit higher-level processes, incorporating one’s thoughts and beliefs (judgment of agency). Even though SoA is fundamental to our interactions with the external...

The Balanced Mind and its Intrinsic Neural Timescales in Advanced Meditators

bioRxiv Preprint Server August 29, 2024 Saketh Malipeddi, Arun Sasidharan, Rahul Venugopal et al. 4 citations preprint

A balanced mind, or equanimity, cultivated through meditation and other spiritual practices, is considered one of the highest mental states. Its core features include deidentification and non-duality. Despite its significance, its neural correlates remain unknown. To address this, we acquired 128-channel EEG data (n = 103) from advanced and novice meditators (from the Isha Yoga tradition) and...

Behavioral pharmacology of mescaline - the role of serotonin 5-HT2A, 5-HT2B, 5-HT2C and 5-HT1A receptors

bioRxiv Preprint Server August 28, 2024 Lucie Olejníková-Ladislavová, Michaela Fujáková-Lipski, Klára Šíchová et al. preprint

Rationale Mescaline is a classical psychedelic compound with a phenylethylamine structure that primarily acts on serotonin 5-HT2A/C receptors, but also binds to 5-HT1A and 5-HT2B receptors. Despite being the first psychedelic ever isolated and synthesized, the precise role of different serotonin receptor subtypes in its behavioral pharmacology is not fully understood.

Neural correlates of phenomenological attitude toward perceptual experience

bioRxiv Preprint Server July 7, 2024 Satoshi Nishida, Hiro Taiyo Hamada, Takuya Niikawa et al. 2 citations preprint

Phenomenology is one of the most promising approaches to study conscious experience. It holds that a rigorous study of conscious experience requires a transition in the subject from the “natural attitude” (NA) to the “phenomenological attitude” (PA). NA describes our ordinary stance, in which our attention is directed at external objects and events. PA is a distinctive, reflective stance in...

Transition to chaos separates learning regimes and relates to measure of consciousness in recurrent neural networks

bioRxiv Preprint Server May 15, 2024 Dana Mastrovito, Yuhan Helena Liu, Lukasz Kusmierz et al. preprint

Recurrent neural networks exhibit chaotic dynamics when the variance in their connection strengths exceed a critical value. Recent work indicates connection variance also modulates learning strategies; networks learn ”rich” representations when initialized with low coupling and ”lazier”solutions with larger variance. Using Watts-Strogatz networks of varying sparsity, structure, and hidden...

Intracranial substrates of meditation-induced neuromodulation in amygdala and hippocampus

bioRxiv Preprint Server May 10, 2024 Christina Maher, Lea Tortolero, Daniel D Cummins et al. 1 citation preprint

Meditation is an accessible mental practice associated with emotional regulation and well-being. Loving-kindness meditation (LKM), a specific sub-type of meditative practice, involves focusing one’s attention on thoughts of well-being for oneself and others. Meditation has been proven to be beneficial in a variety of settings, including therapeutical applications, but the neural activity...

Effects of Ayahuasca on Ethanol-Conditioned Place Preference and ΔFosB Expression in the Nucleus Accumbens in Mice

bioRxiv Preprint Server May 7, 2024 Victor Distefano Wiltenburg, Gabriela Morales-Lima, Aline Valéria Sousa Santos et al. preprint

Abstract Background Ayahuasca, a psychoactive Amazonian preparation, is increasingly studied for substance-use disorders. Objectives Investigate whether oral lyophilised-ayahuasca attenuates ethanol-induced conditioned place preference (CPP) in mice and alters ΔFosB expression in nucleus accumbens (NAc). Methods Male Swiss mice received water or ayahuasca (130-1950 mg/kg, p.o.) 30 min before...

The selective 5-HT2A receptor agonist LPH-5 induces persistent and robust antidepressant-like effects in rodents

bioRxiv Preprint Server April 19, 2024 Anders A. Jensen, Cláudia R. Cecchi, Meghan Hibicke et al. preprint

Psychedelic-assisted psychotherapy has over the last decade emerged as a promising treatment strategy for mental health disease, and the therapeutic potential in classical psychedelics such as psilocybin, LSD and 5-MeO-DMT is presently being pursued in a plethora of clinical trials. However, the resurgent interest in the drugs as therapeutics has also prompted a search for novel agents with...

Neural correlates of pure presence

bioRxiv Preprint Server April 18, 2024 Melanie Boly, Richard Smith, Giulietta Vigueras Borrego et al. 5 citations preprint

Pure presence (PP) is described in several meditative traditions as an experience of a vast, vivid space devoid of perceptual objects, thoughts, and self. Integrated information theory (IIT) predicts that such vivid experiences may occur when the cortical substrate of consciousness is virtually silent. To test this, we analyzed high-quality 256-electrode high-density electroencephalography...

Trauma Under Psychedelics: How Psychoactive Substances Impact Trauma Processing

bioRxiv Preprint Server March 28, 2024 Ophir Netzer, Noa Magal, Yonatan Stern et al. 7 citations preprint

Traumatic events play a causal role in the etiology of stress-related psychopathologies such as depression and posttraumatic stress disorder (PTSD). Recent research highlighted the therapeutic potential of psychoactive substances in alleviating trauma symptoms among chronic stress-related patients. This study is the first to investigate the impact of psychoactive substances consumed during...